S Yoshua, G Watson, J Howard, V Velasco-Berrelleza, MC Leake, A Noy* (2020). “A nucleoid-associated protein bends and bridges DNA in a multiplicity of topological states with varying specificity” bioRxiv.

V Velasco-Berrelleza, M Burmann, JW Shepherd, MC Leake, R Golestanian, A Noy* (2020). “SerraNA: a program to determine nucleic acids elasticity from simulation data” bioRxiv.

ALB Pyne, A Noy*, K Main, V Velasco-Berrelleza, MM Piperakis, LA Mitchenall, FM Cugliandolo, JG Beton, CEM Stevenson, BW Hoogenboom, AD Bates, A Maxwell, SA Harris (2020). “Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and recognition” bioRxiv. (shared first author and corresponding author)

ASB Jalal, NT Tran, CE Stevenson, EW Chan, RL, Xiao Tan, A Noy, DM Lawson, TBK Le (2020). “Diversification of DNA-binding specificity via permissive and specificity-switching mutations in the ParB/Noc protein family” Cell Reports, 32, 107928.

JW Shepherd, RJ Greenall, MIJ Probert, A Noy*, MC Leake (2020). “The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA”. Nuc Acids Res, 48, 1748-63. (corresponding auhtor)

A Noy, A Maxwell, SA Harris (2017). “Interference between triplex and protein binding to distal sites on supercoiled DNA” Biophys J, 112, 523-531. DOI: 10.1016/j.bpj.2016.12.034Highlighted article.

T Sutthibutpong, C Matek, CJ Benham, GG Slade, A Noy, C Laughton, JPK Doye, AA Louis and SA Harris (2016). “Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation” Nuc Acids Res,  44, 9121-9130. DOI: 10.1093/nar/gkw815

A Noy, T Sutthibutpong and SA Harris (2016). “Protein/DNA interactions in complex DNA topologies: expect the unexpected” Biophys Rev, 8, 233. DOI:10.1007/s12551-016-0208-8

T Sutthibutpong, A Noy and SA Harris (2016). “Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance and Analysis” Meth Mol Biol, 1431, 195. DOI 10.1007/978-1-4939-3631-1_15

Ivan II, Dans PD, Noy A, Perez A, Faustino I, Hopsital A, Walther J, Andrio P, Goni R, Balaceanu A, Portella G, Battistini F, Gelpi JL, Gomez-Pinto I, Gonzalez C, Vendruscolo M, Laughton CA, Harris SA, Case, Orozco M (2016). “Parmbsc1: a refined force-field for DNA simulations” Nature Methods, 13, 55. DOI:10.1038/nmeth.3658

Sutthibutpong T, Harris SA, Noy A* (2015). “Comparison of molecular contours for measuring writhe in atomistic supercoiled DNA” J Chem Theor Comput, 11, 2768. DOI:10.1021/acs.jctc.5b00035

Noy A, Golestanian R (2013). Comment on “Length scale dependence of DNA mechanical properties” Reply Phys Rev Lett, 111, 179802. DOI:10.1103/PhysRevLett.111.179802

Bates AD, Noy A, Piperakis MM, Harris SA, Maxwell A (2013). “Small DNA circles as a probes of DNA topology” Biochem Soc Trans, 41, 565-70. DOI: 10.1042/BST20120320

Noy A, Golestanian R (2012) “Length dependence of DNA mechanical properties” Phys Rev Lett, 109, 228101. DOI:10.1103/PhysRevLett.109.228101. Highlighted Article with the corresponding focus: Ball P. Physics 5, 134 (2012).

Noy A, Golestanian R (2010) “The chirality of DNA: elasticity cross-terms at base-pair level including A-tracts and the influence of ionic strength” J Phys Chem B, 114, 8022-31. DOI: 10.1021/jp104133j

Noy A, Soteras I, Luque FJ, Orozco M (2009). “The impact of monovalent ion force field model in nucleic acids simulations” Phys Chem Chem Phys, 11, 10596-607. DOI: 10.1039/B912067J

Orozco M, Noy A, Perez A (2008). “Recent Advances in the study of nucleic acid flexibility by molecular dynamics” Curr Opin Struct Biol, 18, 185-93. DOI:10.1016/

Noy A, Luque FJ, Orozco M (2008). “Theoretical analysis of antisense duplexes: determinants of the RNase H susceptibility” J Am Chen Soc, 130, 3486-96. DOI: 10.1021/ja076734u

Noy A, Perez A, Laughton CA, Orozco M (2007. “Theoretical study of large conformational transitions in DNA: the B-A conformational change in water and ethanol/water” Nuc Acids Res, 35, 3330-8. DOI: 10.1093/nar/gkl1135

Noy A, Meyer T, Rueda M, Ferrer C, Valencia A, Prez A, de la Cruz X, Lopez-Bes JM, Pouplana R, Fernandez-Recio J, Luque FJ, Orozco M (2006). “Data mining of molecular dynamics trajectories of nucleic acids” J Biomol Struct Dynam, 23, 447-56. DOI: 10.1080/07391102.2006.10507070

Noy A, Perez A, Marquez M, Luque FJ, Orozco M (2005). “Structure, recognition properties, and flexibility of the DNA.RNA hybrid” J Am Chem Soc, 127, 4910-20. DOI: 10.1021/ja043293v

Perez A, Noy A, Lankas F, Luque FJ, Orozco M (2004). “The relative flexibility of B-DNA and A-RNA duplexes: database analysis” Nuc Acids Res, 32, 6144-51. DOI: 10.1093/nar/gkh954

Noy A, Perez A, Lankas F, Luque FJ, Orozco M (2004). “Relative flexibility of DNA and RNA: a molecular dynamics study” J Mol Biol, 343, 627-38. DOI:10.1016/j.jmb.2004.07.048

Orozco M, Perez A, Noy A, Luque FJ (2003). “Theoretical methods for the simulation of nucleic acids” Chem Soc Rev, 32, 350-64. DOI: 10.1039/B207226M